Constants

Constants of drug2ways.

drug2ways.constants.DEFAULT_DRUG2WAYS_DIR = PosixPath('/home/docs/.data/drug2ways')

Default drug2ways directory using PyStow

drug2ways.constants.ensure_genesets()[source]

Download gene sets.

drug2ways.constants.ensure_output_dirs()[source]

Ensure that the output directories exists.

drug2ways.constants.download_pathway(url: str, export_path: str) → None[source]

Make a function that downloads the data for you, or uses a cached version at the given path.

Parameters

  • url – The URL of some data

  • export_path – folder where decompressed file will be exported

drug2ways.constants.CSV = 'csv'

csv

drug2ways.constants.TSV = 'tsv'

tsv

drug2ways.constants.GRAPHML = 'graphml'

graphML

drug2ways.constants.BEL = 'bel'

bel

node link json

drug2ways.constants.BEL_PICKLE = 'pickle'

pickle

drug2ways.constants.GML = 'gml'

gml

drug2ways.constants.EDGE_LIST = '.lst'

edge list

drug2ways.constants.FORMATS = ['csv', 'tsv', 'graphml', 'bel', 'json', 'pickle']

drug2ways available network formats

drug2ways.constants.FORMAT_SEPARATOR_MAPPING = {'csv': ',', 'tsv': '\t'}

Acceptable column names for the graph

drug2ways.constants.SOURCE = 'source'

Column name for source node

drug2ways.constants.TARGET = 'target'

Column name for target node

drug2ways.constants.RELATION = 'polarity'

Column name for relation

drug2ways.constants.EMOJI = '💊🔬'

drug2ways emoji